Map between TAIR IDs and Enzyme Names from ARACYC

Description

org.At.tairARACYCENZYME is an R object that provides mappings between TAIR identifiers and Enzyme Names from ARACYC.

Details

Each TAIR identifier maps to a named vector containing the Enzyme name for that gene according to the ARACYC database. If this information is unknown, the vector will contain an NA.

Mappings between tair identifiers and enzyme identifiers were obtained using files provided by: Tair ftp://ftp.plantcyc.org/Pathways/Data\_dumps/PMN8\_July2013/aracyc\_pathways.20130709 With a date stamp from the source of: 2013-May16

Examples

        x <- org.At.tairARACYCENZYME
        # Get the tair identifiers that are mapped to an Enzyme Name 
        mapped_tairs <- mappedkeys(x)
        # Convert to a list
        xx <- as.list(x[mapped_tairs])
        if(length(xx) > 0) {
          # Get the ENZYME name for the first five tairs
          xx[1:5]
          # Get the first one
          xx[[1]]
        }