Mappings between TAIR identifiers and KEGG pathway identifiers

Description

AraCyc http://www.arabidopsis.org/tools/aracyc/ maintains pathway data for Arabidopsis thaliana. org.At.tairARACYC maps TAIR identifiers to the common names of the pathways in which the genes represented by the tair identifiers are involved. Information is obtained from AraCyc.

Details

Annotation based on data provided by: Tair ftp://ftp.plantcyc.org/Pathways/Data\_dumps/PMN8\_July2013/aracyc\_pathways.20130709 With a date stamp from the source of: 2013-May16

References

http://www.genome.ad.jp/kegg/

Examples

  x <- org.At.tairARACYC
  # Get the tair identifiers that are mapped to pathways
  mapped_tairs <- mappedkeys(x)
  # Convert to a list
  xx <- as.list(x[mapped_tairs])
  if(length(xx) > 0) {
    # Get the pathways for the first five tairs
    xx[1:5]
    # For the first tair
    xx[[1]]
  }